workflows
Assembly, variants, metagenomics
Micro Solutions / Life Science
EPI2ME Software
Ready-made analytical workflows for nanopore sequencing data, locally or in the cloud
Product overview
- EPI2ME
- Oxford Nanopore
- Great Britain
- MinKNOW / EPI2ME
- EPI2ME
Ready-made analytical workflows for nanopore sequencing data, locally or in the cloud
Assembly, variants, metagenomics and transcriptomics through graphics or command line
EPI2ME is a set of ready-made analytical workflows that convert nanopore sequencing data into interpreted results.
The customized processes cover assembly, variants, metagenomics, transcriptomics, and other tasks. The user receives interactive reports and can run the analysis via a graphical interface or command line, locally or in the cloud.
MacOS, Windows and Linux are supported; workflows use MinKNOW results to generate structured reports; CPU/GPU, memory and disk requirements depend on the process and data volume selected; container versions and parameters are fixed for reproducibility.
Key figures
locally/cloud
deployment
macOS/Windows/Linux
OS-supported
Applications
- Genome assembly
- Optional analysis
- Metagenomics
- Transcriptomics
- Analysis of sequencing data
Models and configurations
- EPI2ME
Product details
EPI2ME interface
interactive reports on sequencing data
The Oxford Nanopore Analytical Ecosystem
Minknow and EPI2ME
Ready-made analysis scenarios
- Pre-tuned workflows cover assembly, option search, metagenomics, transcriptomics and other tasks
- User receives interactive reports based on analysis results
Launch flexibility
- Run through a graphical interface or through the command line
- Analysis is done locally or in the cloud.
Compatibility
- Supported macOS, Windows and Linux
- Workflows use data from MinKNOW
- Requirements for CPU/GPU, memory and disk depend on the selected workflow and the amount of data.
Functions
| Purpose | analysis of nanopore sequencing data by ready-made workflows |
|---|---|
| Workflows field | Genome assembly, variant search, metagenomics, transcriptomics |
| Interface. | Graphical interface and command line |
| Deployment | locally or in the cloud |
Compatibility
| Operating systems | macOS, Windows, Linux |
|---|---|
| Source of data | MinKNOW (POD5/FASTQ/BAM) |
Related equipment types
- Nanopore sequencing
- Flow cells
- MinKNOW
Related products
- BGI DNBSEQ-E25 — Nanopore sequencing
- Cytek Cytek Aurora Evo — Flow cells
Classification
- Sequencing and genotyping
- Bioinformatics and data management
- Equipment for molecular biology and genetics
- Bioinformatics and software
- Analysis and interpretation of NGS data
- EPI2ME